Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015813908.1_cds_XP_016497735.1_11834
CDS Infomation

[gene=LOC107816525] [db_xref=GeneID:107816525] [protein=PAP-specific phosphatase HAL2-like] [protein_id=XP_016497735.1] [location=complement(join(24296..24599,25746..26433,28912..29299))] [gbkey=CDS]
Sequence

ATGTCTTGTACTTGTACTACTACTAGCTTTCCAATCAAAGTCCCACATACTTTGTTCCAT
TCTAGGAAGTCTAATGATGTTTTTCCCAAAACCCAAATACTAGGAACTCTCTCTTTCTCT
TCCAAGAAAAATTCCCACTTGGGTTTCACTGACAAAATATCTCTTGCTCAGTGTAGTAAA
ACCAGTTTTCTATCGGAAATGGATGAAGATTGTAAATTGGAAGTTAGCTCAATTGATATT
CCAGATGGGTATTGTAAAGAACTGGAAATTGCTGTAAGAGCTGTACATATGGCTTGCTTG
CTTTGTCAGAGACTTCAAGATAATTTGCTTTCTAAATCCTTTGAACAAGTCCATTCTAAG
GAAGATAATTCCCCTGTCACAATTGCTGATTGGAGTGTCCAAGCAATTGTCAGCTGGGTT
CTGTCCGAGGCTTTTGGCAGTGAGAATGTCTCTATTGTTGCTGAAGAAGATGTGGAAGTT
CTTTCCAAGGCTAGCGCAGTTGGCCTGTTAGAAGCAGTAGTAAGAACCGTGAATGAATGT
CTAGCAGATGCACCCCGTTTTGGACTGAAAGGTCCTGGTACTGATCTTGATGCGAAAGCT
GTTCTTGCGGCCATAAGTCGGTGCAGCTTGGCCGGCGCTAGAGGTAGCAAGTTTTGGGTA
CTGGATCCTGTTGATGGCACATTGGGTTTTGTGCGTGGAGATCAATATGCCATTGCTTTG
GCATTGATAGAAGATGGAGAACCTGTGCTTGGGGTTCTCGGGTGCCCAAATTACCCTATG
AAGAAGGAATGGCTTAGTTATCAAAATGGTTATCGGAGAATCTTATCTAGGTTGACCTCC
CAAACATCTGTATCTGGGGATAAAGGTTCTGTACTTTATGCAAGGAAAGGTGGCGGCAAG
GCTTGGATGCAACCATTACTCTATGGAGAAAAGAACTTTGTGTGGCCAAACTCTGCAAAG
CAAATCAAAGTCTCCTCCATAGATAATCCAGCATTGGCTACCTTTTGTGAACCCGTTGAG
AAGGCAAATTCAAGCCATTCATTCACAGCAGGACTGGCCCATAGTGTTGGACTTAGGAAC
CAGCCATTACGTGTATATAGCATGGTGAAGTATGCAGCCATAGCTCGAGGAGATGCTGAG
ATATTCATGAAATTTGCGAGTGCTGGTTACAAGGAAAAAATATGGGATCATGCAGCTGGT
GTTCTTATCATTGAAGAAGCCGGTGGTATGGTGACAGATGCAGGAGGGCAGCCACTAGAC
TTCTCCAAAGGCGTATACTTAGAAGGACTTGATCGAGGTATAATTGCTTGCGCTGGAGCA
AAACTACACGAAAAGATTATCCAGGCTGTAGATGCTAGCTGGAACTCCTCTAGCCTTTAA

Peptide Sequence

PEP ID

XP_016497735.1
PEP Infomation

PREDICTED: PAP-specific phosphatase HAL2-like [Nicotiana tabacum]
Sequence

MSCTCTTTSFPIKVPHTLFHSRKSNDVFPKTQILGTLSFSSKKNSHLGFTDKISLAQCSK
TSFLSEMDEDCKLEVSSIDIPDGYCKELEIAVRAVHMACLLCQRLQDNLLSKSFEQVHSK
EDNSPVTIADWSVQAIVSWVLSEAFGSENVSIVAEEDVEVLSKASAVGLLEAVVRTVNEC
LADAPRFGLKGPGTDLDAKAVLAAISRCSLAGARGSKFWVLDPVDGTLGFVRGDQYAIAL
ALIEDGEPVLGVLGCPNYPMKKEWLSYQNGYRRILSRLTSQTSVSGDKGSVLYARKGGGK
AWMQPLLYGEKNFVWPNSAKQIKVSSIDNPALATFCEPVEKANSSHSFTAGLAHSVGLRN
QPLRVYSMVKYAAIARGDAEIFMKFASAGYKEKIWDHAAGVLIIEEAGGMVTDAGGQPLD
FSKGVYLEGLDRGIIACAGAKLHEKIIQAVDASWNSSSL

Transcript Sequence

Gene sequence data has not been registered.